Description
This panel contains genes associated with pituitary hormone deficiency. 
Includes isolated hormone deficiency, combined hormone deficiencies, and panhypopituitarism.

It has been compared against the Genomics England PanelApp 'Pituitary hormone deficiency' panel V4.1, with all discrepancies reviewed and resolved (November 2025).

23 reviewers

  • Natasha Brown (Victorian Clinical Genetics Services)

  • Belinda Chong (Victorian Clinical Genetics Services)

  • Lauren Akesson (Royal Melbourne Hospital)

  • Paul De Fazio (Victorian Clinical Genetics Services)

  • Anna Le Fevre (Victorian Clinical Genetics Services)

  • Arina Puzriakova (Genomics England)

  • Danielle Ariti (University of Melbourne)

  • Manny Jacobs (Victorian Clinical Genetics Services)

  • Rylee Peters (Victorian Clinical Genetics Services)

  • Ain Roesley (Victorian Clinical Genetics Services)

  • Sangavi Sivagnanasundram (Melbourne Health)

  • Michelle Torres (Victorian Clinical Genetics Services)

  • Teresa Zhao (Victorian Clinical Genetics Services)

  • Lilian Downie (Victorian Clinical Genetics Services)

  • Hali Van Niel (University of Melbourne)

  • Bryony Thompson (Royal Melbourne Hospital)

  • Seb Lunke (Victorian Clinical Genetics Services)

  • Lucy Spencer (Victorian Clinical Genetics Services)

  • Elena Savva (Victorian Clinical Genetics Services)

  • Crystle Lee (Victorian Clinical Genetics Services)

  • Krithika Murali (Pathology Queensland)

  • Zornitza Stark (Victorian Clinical Genetics Services)

  • chirag patel (Genetic Health Queensland)

131 Entities

131 reviewed, 76 green

List Entity Reviews Mode of inheritance Details
131 Entitiess
Green Green List (high evidence)
ANOS1
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 1 with or without anosmia (Kallmann syndrome 1), MIM# 308700
Tags
Green Green List (high evidence)
ARHGAP35
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism, MONDO:0015770, ARHGAP35-related
Tags
Green Green List (high evidence)
BMP4
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Microphthalmia, syndromic 6, MIM#607932
Tags
Green Green List (high evidence)
BRAF
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Cardiofaciocutaneous syndrome, MONDO:0015280
Tags
Green Green List (high evidence)
BTK
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Isolated growth hormone deficiency, type III, with agammaglobulinemia (307200)
Tags
Green Green List (high evidence)
CHD7
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypogonadotropic hypogonadism 5 with or without anosmia (612370)
  • CHARGE syndrome (214800)
Tags
Green Green List (high evidence)
CPE
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
Disease associations
  • BDV syndrome MONDO:0859150
Tags
Green Green List (high evidence)
CUL4B
2 reviews
2 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Mental retardation, X-linked, syndromic 15 (Cabezas type) 300354
Tags
Green Green List (high evidence)
DCAF17
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
Disease associations
  • Woodhouse-Sakati syndrome, MIM# 241080
Tags
Green Green List (high evidence)
DLG2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Disease associations
  • delayed puberty, self-limited, MONDO:0859205
Tags
  • SV/CNV
Green Green List (high evidence)
EIF2S3
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Genetic Health Queensland
Disease associations
  • MEHMO syndrome, MIM# 300148
Tags
Green Green List (high evidence)
FGF17
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 20 with or without anosmia, MIM# 615270
Tags
Green Green List (high evidence)
FGF8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 6 with or without anosmia (612702)
Tags
Green Green List (high evidence)
FGFR1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypogonadotropic hypogonadism 2 with or without anosmia 147950
Tags
Green Green List (high evidence)
FOXA2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypopituitarism, MONDO:0005152
  • Hyperinsulinism, MONDO:0002177
Tags
Green Green List (high evidence)
FSHB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 24 without anosmia, MIM#229070
Tags
Green Green List (high evidence)
GH1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Growth hormone deficiency, isolated, type IA (262400)
  • Growth hormone deficiency, isolated, type IB (612781)
  • Growth hormone deficiency, isolated, type II (173100)
Tags
Green Green List (high evidence)
GHR
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Growth hormone insensitivity, partial (604271)
  • Increased responsiveness to growth hormone (604271)
  • Laron dwarfism (262500)
Tags
Green Green List (high evidence)
GHRHR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Growth hormone deficiency, isolated, type IV (618157)
Tags
Green Green List (high evidence)
GHSR
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Growth hormone deficiency, isolated partial (615925)
Tags
Green Green List (high evidence)
GLI2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Culler-Jones syndrome (615849)
  • Holoprosencephaly 9 (610829)
Tags
Green Green List (high evidence)
GLI3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Greig cephalopolysyndactyly syndrome (175700)
  • Pallister-Hall syndrome (146510)
Tags
Green Green List (high evidence)
GNAI2
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Syndromic disease MONDO:0002254, GNAI2-related
Tags
Green Green List (high evidence)
GNRH1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 12 with or without anosmia, MIM# 614841
Tags
Green Green List (high evidence)
GNRHR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 7 without anosmia (146110)
Tags
Green Green List (high evidence)
HESX1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Growth hormone deficiency with pituitary anomalies (182230)
  • Pituitary hormone deficiency, combined, 5 (182230)
Tags
Green Green List (high evidence)
HID1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Developmental and epileptic encephalopathy 105 with hypopituitarism MIM#619983
Tags
Green Green List (high evidence)
IGSF1
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypothyroidism, central, and testicular enlargement, MIM# 300888
Tags
Green Green List (high evidence)
IRS4
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypothyroidism, congenital, nongoitrous, 9, MIM# 301035
Tags
Green Green List (high evidence)
KCNQ1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypopituitarism, MONDO:0005152
Tags
Green Green List (high evidence)
KISS1R
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 8 with or without anosmia (MIM#614837)
Tags
Green Green List (high evidence)
KLB
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism MONDO:0018555, KLB-related
Tags
Green Green List (high evidence)
LEPR
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Obesity due to leptin receptor gene deficiency, MONDO:0013992
Tags
  • clinical trial
  • treatable
Green Green List (high evidence)
LHB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 23 with or without anosmia (MIM#228300)
Tags
Green Green List (high evidence)
LHX3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Pituitary hormone deficiency, combined, 3 (221750)
Tags
  • treatable
Green Green List (high evidence)
LHX4
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Pituitary hormone deficiency, combined, 4 (262700)
Tags
  • treatable
Green Green List (high evidence)
MAGEL2
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, maternally imprinted (paternal allele expressed)
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Schaaf-Yang syndrome, MIM# 615547
Tags
Green Green List (high evidence)
NEUROG3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Congenital malabsorptive diarrhea 4, MONDO:0012479
  • Hypogonadotropic hypogonadism, MONDO:0018555
Tags
Green Green List (high evidence)
NFKB2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Immunodeficiency, common variable, 10 MIM# 615577
  • Low serum IgG, IgA, IgM
  • low B cell numbers
  • low switched memory B cells
  • Recurrent sinopulmonary infections, Alopecia
  • endocrinopathies
  • ACTH deficiency
Tags
Green Green List (high evidence)
NOS1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism, MONDO:0018555
Tags
Green Green List (high evidence)
NR0B1
3 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Adrenal hypoplasia, congenital (MIM# 300200)
Tags
  • SV/CNV
Green Green List (high evidence)
OTX2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Pituitary hormone deficiency, combined, 6 (613986)
  • Microphthalmia, syndromic 5 (610125)
Tags
Green Green List (high evidence)
PCSK1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Obesity with impaired prohormone processing MIM#600955
Tags
Green Green List (high evidence)
PITX2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Anterior segment dysgenesis 4 (137600)
  • Axenfeld-Rieger syndrome, type 1 (180500)
Tags
Green Green List (high evidence)
PLXNA3
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism
Tags
Green Green List (high evidence)
PNPLA6
4 reviews
4 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Oliver-McFarlane syndrome (275400)
  • Spastic paraplegia 39, autosomal recessive (612020)
  • Boucher-Neuhauser syndrome (215470)
Tags
Green Green List (high evidence)
POLR3A
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Leukodystrophy, hypomyelinating, 7, with or without oligodontia and/or hypogonadotropic hypogonadism (607694)
Tags
Green Green List (high evidence)
POLR3B
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Leukodystrophy, hypomyelinating, 8, with or without oligodontia and/or hypogonadotropic hypogonadism
  • OMIM #614381
Tags
Green Green List (high evidence)
POMC
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Obesity, adrenal insufficiency, and red hair due to POMC deficiency MIM#609734
Tags
Green Green List (high evidence)
POU1F1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Pituitary hormone deficiency, combined, 1 MIM# 613038
  • pituitary hypoplasia
  • severe growth failure
  • combined GH, PRL and TSH deficiency
  • distinct facial features (prominent forehead, mid-facial hypoplasia, depressed nasal bridge, deep-set eyes and a short nose with anteverted nostrils)
Tags
Green Green List (high evidence)
PROK2
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 4 with or without anosmia (MIM#610628)
Tags
Green Green List (high evidence)
PROKR2
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypogonadotropic hypogonadism 3 with or without anosmia (244200)
Tags
Green Green List (high evidence)
PROP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Pituitary hormone deficiency, combined, 2 MIM# 262600
Tags
Green Green List (high evidence)
RNF216
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Disease associations
  • Cerebellar ataxia-hypogonadism syndrome, MONDO:0008935
Tags
Green Green List (high evidence)
RNPC3
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Growth hormone deficiency
  • Intellectual disability
Tags
Green Green List (high evidence)
ROBO1
2 reviews
2 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Pituitary hormone deficiency, combined or isolated, 8, MIM# 620303
Tags
Green Green List (high evidence)
SEMA3A
1 review
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
Disease associations
  • Hypogonadotropic hypogonadism 16 with or without anosmia - MIM#614897
Tags
Green Green List (high evidence)
SEMA3F
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism
Tags
Green Green List (high evidence)
SLC29A3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Histiocytosis-lymphadenopathy plus syndrome, MIM# 602782
Tags
Green Green List (high evidence)
SMCHD1
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Disease associations
  • Bosma arhinia microphthalmia syndrome, MIM# 603457
  • Arhinia, choanal atresia, microphthalmia MONDO:0011323
Tags
Green Green List (high evidence)
SOX10
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review
  • Expert Review Green
Disease associations
  • Kallman syndrome
  • PCWH syndrome (MIM#609136)
  • Waardenburg syndrome, type 2E, with or without neurologic involvement (MIM#611584)
  • Waardenburg syndrome, type 4C (MIM#613266)
Tags
Green Green List (high evidence)
SOX11
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review
  • Expert Review Green
Disease associations
  • Intellectual developmental disorder with microcephaly and with or without ocular malformations or hypogonadotropic hypogonadism, MIM# 615866
Tags
Green Green List (high evidence)
SOX2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Microphthalmia, syndromic 3, MIM# 206900
Tags
Green Green List (high evidence)
SOX3
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Panhypopituitarism, X-linked (312000)
  • Mental retardation, X-linked, with isolated growth hormone deficiency (300123)
Tags
  • SV/CNV
Green Green List (high evidence)
SOX3_PHPX_GCN
STR
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert list
  • Expert Review Green
Disease associations
  • Intellectual disability, X-linked, with isolated growth hormone deficiency MIM#300123
  • Panhypopituitarism, X-linked MIM#312000
Tags
  • paediatric-onset
Green Green List (high evidence)
TAC3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 10 with or without anosmia (MIM#614839)
Tags
Green Green List (high evidence)
TACR3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Disease associations
  • Hypogonadotropic hypogonadism 11 with or without anosmia, MIM# 614840
Tags
Green Green List (high evidence)
TBC1D32
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Syndromic hypopituitarism
Tags
Green Green List (high evidence)
TBL1X
2 reviews
2 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypothyroidism, congenital, nongoitrous, 8 MIM#301033
Tags
Green Green List (high evidence)
TBX19
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Adrenocorticotropic hormone deficiency, 201400
Tags
Green Green List (high evidence)
TBX3
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Disease associations
  • Ulnar-mammary syndrome, MIM# 181450
  • MONDO:0008411
Tags
Green Green List (high evidence)
TCF12
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism 26 with or without anosmia, MIM# 619718
  • Kallmann syndrome
Tags
Green Green List (high evidence)
TSHB
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Congenital hypothyroidism
  • Hypothryoidism, congenital, nongoitrous 4, 275100
  • severe isolated central hypothyroidism
Tags
Green Green List (high evidence)
TUBB3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Disease associations
  • TUBB3-related tubulinopathy, MONDO:0100154
Tags
Green Green List (high evidence)
WDR11
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert List
  • Expert Review Green
  • Genomics England PanelApp
Disease associations
  • Hypogonadotropic hypogonadism 14 with or without anosmia (614858)
Tags
Green Green List (high evidence)
ZRSR2
2 reviews
2 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
Disease associations
  • Orofaciodigital syndrome XXI, MIM# 301132
Tags
Amber Amber List (moderate evidence)
AMH
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism, MONDO:0018555
Tags
Amber Amber List (moderate evidence)
ARNT2
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Genetic Health Queensland
  • Genomics England PanelApp
  • Literature
Disease associations
  • Webb-Dattani syndrome 615926
Tags
Amber Amber List (moderate evidence)
CCDC141
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Amber
Disease associations
  • congenital hypogonadotropic hypogonadism, MONDO:0015770, CCDC141-related
Tags
Amber Amber List (moderate evidence)
CDON
2 reviews
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Genomics England PanelApp
Disease associations
  • Holoprosencephaly 11 (614226)
Tags
Amber Amber List (moderate evidence)
CLPP
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Amber
Disease associations
  • Perrault syndrome 3, MIM# 614129
Tags
Amber Amber List (moderate evidence)
ESRP2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Amber
Disease associations
  • Cleft palate, MONDO:0016064
  • Hypopituitarism MONDO:0005152
Tags
Amber Amber List (moderate evidence)
FEZF1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 22, with or without anosmia 616030
Tags
Amber Amber List (moderate evidence)
KISS1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Disease associations
  • Hypogonadotropic hypogonadism 13 with or without anosmia, MIM# 614842
Tags
Amber Amber List (moderate evidence)
NDNF
3 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism 25 with anosmia MIM#618841
Tags
Amber Amber List (moderate evidence)
NLGN3
2 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Disease associations
  • X-linked complex neurodevelopmental disorder MONDO:0100148
  • {Autism susceptibility, X-linked 1} - MIM#300425
  • hypogonadotropic hypogonadism MONDO:0018555
Tags
Amber Amber List (moderate evidence)
PLXNA1
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism MONDO:0018555, PLXNA1-related
Tags
Amber Amber List (moderate evidence)
PLXNB1
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism MONDO:0018555
Tags
Amber Amber List (moderate evidence)
POU6F2
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism, MONDO:0018555
Tags
Amber Amber List (moderate evidence)
PRDM13
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Cerebellar dysfunction, impaired intellectual development, and hypogonadotropic hypogonadism, MIM# 619761
Tags
  • founder
Amber Amber List (moderate evidence)
RAX
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Disease associations
  • Microphthalmia, syndromic 16, MIM#611038
Tags
Amber Amber List (moderate evidence)
RBM28
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Genomics England PanelApp
Disease associations
  • ANE syndrome
  • Alopecia, neurologic defects, and endocrinopathy syndrome (612079)
Tags
Amber Amber List (moderate evidence)
RUNDC1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Other
Disease associations
  • Neurodevelopmental disorder with pituitary anomalies
Tags
Amber Amber List (moderate evidence)
SHH
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Genomics England PanelApp
Disease associations
  • Hypopituitarism, MONDO:0005152
  • Microphthalmia with coloboma 5 (611638)
  • Holoprosencephaly 3 (142945)
Tags
Amber Amber List (moderate evidence)
SPRY4
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Amber
Disease associations
  • Hypogonadotropic hypogonadism 17 with or without anosmia, MIM# 615266
Tags
  • disputed
Amber Amber List (moderate evidence)
TGIF1
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Genomics England PanelApp
Disease associations
  • Holoprosencephaly 4, MONDO:0007734
Tags
Red Red List (low evidence)
AKT3
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Literature
Disease associations
  • overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes, MONDO:0100283
Tags
Red Red List (low evidence)
ARHGAP5
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Literature
Disease associations
  • Kallmann syndrome MONDO:0018800
Tags
Red Red List (low evidence)
AXL
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review
  • Expert Review Red
Disease associations
  • Hypogonadotropic hypogonadism, MONDO:0018555, AXL-related
Tags
Red Red List (low evidence)
BMP2
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Short stature, facial dysmorphism, and skeletal anomalies with or without cardiac anomalies (617877)
Tags
Red Red List (low evidence)
DUSP6
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269
Tags
Red Red List (low evidence)
FLRT3
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 21 with anosmia (MIM# 615271)
Tags
Red Red List (low evidence)
FOXH1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Holoprosencephaly
  • No OMIM number
Tags
Red Red List (low evidence)
GHRH
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • No OMIM number
  • ?Isolated growth hormone deficiency due to defect in GHRF
Tags
Red Red List (low evidence)
GPR161
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Pituitary stalk interruption syndrome MONDO:0019828, GPR161-related
Tags
Red Red List (low evidence)
HAMP
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Haemochromatosis, type 2B, MIM# 613313
Tags
Red Red List (low evidence)
HFE
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Haemochromatosis, MIM# 235200
Tags
Red Red List (low evidence)
HHIP
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • No OMIM number
Tags
Red Red List (low evidence)
HJV
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Hemochromatosis, type 2A, MIM# 602390
Tags
  • new gene name
Red Red List (low evidence)
HNRNPU
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genetic Health Queensland
  • Genomics England PanelApp
Disease associations
  • Epileptic encephalopathy, early infantile, 54 (617391)
Tags
Red Red List (low evidence)
HS6ST1
1 review
1 red
Other
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • {Hypogonadotropic hypogonadism 15 with or without anosmia} 614880
Tags
Red Red List (low evidence)
IFT56
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Disease associations
  • biliary, renal, neurologic, and skeletal syndrome, MONDO:0859191
Tags
Red Red List (low evidence)
IL17RD
1 review
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Hypogonadotropic hypogonadism 18 with or without anosmia, MIM# 615267
Tags
  • disputed
Red Red List (low evidence)
NHLH2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Red
Disease associations
  • Hypogonadotropic hypogonadism 27 without anosmia , MIM# 619755
Tags
Red Red List (low evidence)
NKX2-1
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
  • Victorian Clinical Genetics Services
Disease associations
  • NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction, MONDO:0100520
Tags
Red Red List (low evidence)
NODAL
3 reviews
2 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Heterotaxy, visceral, 5 (270100)
Tags
Red Red List (low evidence)
NRP1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism MONDO:0018555
Tags
Red Red List (low evidence)
NRP2
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Literature
Disease associations
  • Hypogonadotropic hypogonadism, MONDO:0018555
Tags
Red Red List (low evidence)
NSMF
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Red
Disease associations
  • Hypogonadotropic hypogonadism 9 with or without anosmia, MIM# 614838
Tags
Red Red List (low evidence)
PAX6
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Aniridia (106210)
Tags
Red Red List (low evidence)
PSTPIP1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Holoprosencephaly
  • Pyogenic sterile arthritis, pyoderma gangrenosum, and acne (604416)
Tags
Red Red List (low evidence)
PTCH1
3 reviews
2 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Holoprosencephaly 7 (610828)
Tags
Red Red List (low evidence)
SEMA3E
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Red
Disease associations
  • ?CHARGE syndrome (MIM#214800)
Tags
Red Red List (low evidence)
SIX3
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Holoprosencephaly 2 (157170)
  • Non-acquired combined pituitary hormone deficiency MONDO:0018762
Tags
Red Red List (low evidence)
SLC15A4
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • No OMIM number
Tags
Red Red List (low evidence)
SLC20A1
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Bladder-Exstrophy-Epispadias Complex (BEEC)
Tags
Red Red List (low evidence)
SLC40A1
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Haemochromatosis, type 4, MIM# 606069
Tags
Red Red List (low evidence)
TCF7L1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
Disease associations
  • Combined pituitary deficiencies, genetic form, MONDO:0013099, TCF7L1-related
Tags
Red Red List (low evidence)
TFR2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Disease associations
  • Haemochromatosis, type 3 (MIM#604250)
Tags
Red Red List (low evidence)
ZIC2
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Holoprosencephaly 5 (609637)
Tags
Red Red List (low evidence)
ZSWIM6
3 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review
  • Expert Review Red
  • Genomics England PanelApp
  • Victorian Clinical Genetics Services
Disease associations
  • Neurodevelopmental disorder with movement abnormalities, abnormal gait, and autistic features (617865)
  • Acromelic frontonasal dysostosis (603671)
Tags

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